Deepak Srivastava, MD

Our laboratory focuses on understanding the causes of heart disease and on using knowledge of cardiac developmental pathways to devise novel therapeutic approaches for human cardiac disorders. Specifically, we study the molecular events regulating early and late developmental decisions that instruct progenitor cells to adopt a cardiac cell fate and subsequently fashion a functioning heart. We focus on transcriptional and post-transcriptional steps, including those involving microRNAs. We have leveraged this knowledge to reprogram fibroblasts directly into cardiomyocyte-like cells for regenerative purposes. We also seek to identify the causes of human cardiovascular disease by applying modern genetic technologies for the study of complex traits such as congenital heart disease. By using a spectrum of approaches including mouse and human genetics, molecular and developmental biology, and biochemistry we hope to develop a broad understanding of the biology underlying cardiogenesis and cardiovascular disorders.
Education
Residency, - School of Medicine, University of California, San Francisco

  1. Reid MJ, Salazar ML, Troakes C, Lynham S, Srivastava DP, Perez-Nievas BG, Noble W. Alzheimer's disease brain-derived tau extracts show differential processing and transcriptional effects in human astrocytes. iScience 2025. PMID: 40585369


  2. Sierant MC, Jin SC, Bilguvar K, Morton SU, Dong W, Jiang W, Lu Z, Li B, López-Giráldez F, Tikhonova I, Zeng X, Lu Q, Choi J, Zhang J, Nelson-Williams C, Knight JR, Zhao H, Cao J, Mane S, Sedore SC, Gruber PJ, Lek M, Goldmuntz E, Deanfield J, Giardini A, Mital S, Russell M, Gaynor JW, King E, Wagner M, Srivastava D, Shen Y, Bernstein D, Porter GA, Newburger JW, Seidman JG, Roberts AE, Yandell M, Yost HJ, Tristani-Firouzi M, Kim R, Chung WK, Gelb BD, Seidman CE, Brueckner M, Lifton RP. Genomic analysis of 11,555 probands identifies 60 dominant congenital heart disease genes. Proceedings of the National Academy of Sciences of the United States of America 2025. PMID: 40127276


  3. Dong W, Jin SC, Sierant MC, Lu Z, Li B, Lu Q, Morton SU, Zhang J, López-Giráldez F, Nelson-Williams C, Knight JR, Zhao H, Cao J, Mane S, Gruber PJ, Lek M, Goldmuntz E, Deanfield J, Giardini A, Mital S, Russell M, Gaynor JW, Cnota JF, Wagner M, Srivastava D, Bernstein D, Porter GA, Newburger J, Roberts AE, Yandell M, Yost HJ, Tristani-Firouzi M, Kim R, Seidman J, Chung WK, Gelb BD, Seidman CE, Lifton RP, Brueckner M. Recessive genetic contribution to congenital heart disease in 5,424 probands. Proceedings of the National Academy of Sciences of the United States of America 2025. PMID: 40030011


  4. Abdulai-Saiku S, Gupta S, Wang D, Marino F, Moreno AJ, Huang Y, Srivastava D, Panning B, Dubal DB. The maternal X chromosome affects cognition and brain ageing in female mice. Nature 2025. PMID: 39843739


  5. Sanjeev Ranade, Feiya Li, Sean Whalen, Pelonero Angelo, Lin Ye, Yu Huang, Abigail Brand, Tomohiro Nishino, Mauro Costa, Rahul Mital, Ryan Boileau, Frances Koback, Arun Padmanabhan, Alexander Merriman, Langley Wallace, Annie Nguyen, Nikolaus Poulis, Casey Gifford, Katherine Pollard, Deepak Srivastava. Abstract 4140108: A CRISPR-Activation CROP-seq Screen Identifies HMGN1 as a Dosage-Sensitive Regulator of Heart Defects in Down Syndrome. Circulation 2024. PMID:


  6. Alexanian M, Padmanabhan A, Nishino T, Travers JG, Ye L, Pelonero A, Lee CY, Sadagopan N, Huang Y, Auclair K, Zhu A, An Y, Ekstrand CA, Martinez C, Teran BG, Flanigan WR, Kim CK, Lumbao-Conradson K, Gardner Z, Li L, Costa MW, Jain R, Charo I, Combes AJ, Haldar SM, Pollard KS, Vagnozzi RJ, McKinsey TA, Przytycki PF, Srivastava D. Chromatin remodelling drives immune cell-fibroblast communication in heart failure. Nature 2024. PMID: 39443808


  7. Mlakar V, Akkouh I, Halff EF, Srivastava DP, Birkenæs V, Ueland T, Quintana DS, Ormerod MBEG, Steen NE, Djurovic S, Andreassen OA, Aas M. Telomere biology and its maintenance in schizophrenia spectrum disorders: Exploring links to cognition. Schizophrenia research 2024. PMID: 39208769


  8. Pavlinek A, Adhya D, Tsompanidis A, Warrier V, APEX Consortium, Vernon AC, Lancaster M, Mill J, Srivastava DP, Baron-Cohen S. Using Organoids to Model Sex Differences in the Human Brain. Biological Psychiatry Global Open Science 2024. PMID: 39092139


  9. Duarte RRR, Pain O, Bendall ML, de Mulder Rougvie M, Marston JL, Selvackadunco S, Troakes C, Leung SK, Bamford RA, Mill J, O'Reilly PF, Srivastava DP, Nixon DF, Powell TR. Integrating human endogenous retroviruses into transcriptome-wide association studies highlights novel risk factors for major psychiatric conditions. Nature communications 2024. PMID: 38778015


  10. Padmanabhan A, de Soysa TY, Pelonero A, Sapp V, Shah PP, Wang Q, Li L, Lee CY, Sadagopan N, Nishino T, Ye L, Yang R, Karnay A, Poleshko A, Bolar N, Linares-Saldana R, Ranade SS, Alexanian M, Morton SU, Jain M, Haldar SM, Srivastava D, Jain R. A genome-wide CRISPR screen identifies BRD4 as a regulator of cardiomyocyte differentiation. Nature Cardiovascular Research 2024. PMID: 39196112


  11. Das D, Trikha A, Kaur M, Muthiah T, Pandey RK, Ankalji B, Madhusudhan KS, Srivastava DN, Singh PM. Comparison of gastric emptying time between breast-fed and formula milk-fed infants less than 6 months old, using gastric ultrasound-An observational study. Paediatric anaesthesia 2024. PMID: 38323713


  12. Aabdien A, Sichlinger L, Borgel Z, Jones MR, Waston IA, Gatford NJF, Raval P, Tanangonan L, Powell TR, Duarte RRR, Srivastava DP. Schizophrenia risk proteins ZNF804A and NT5C2 interact in cortical neurons. The European journal of neuroscience 2024. PMID: 38279611


  13. Zholudeva LV, Fortino T, Agrawal A, Vila OF, Williams M, McDevitt T, Lane MA, Srivastava D. Human spinal interneurons repair the injured spinal cord through synaptic integration. bioRxiv : the preprint server for biology 2024. PMID: 38260390


  14. Nishino T, Ranade SS, Pelonero A, van Soldt BJ, Ye L, Alexanian M, Koback F, Huang Y, Sadagopan N, Lam A, Zholudeva LV, Li F, Padmanabhan A, Thomas R, van Bemmel JG, Gifford CA, Costa MW, Srivastava D. Single Cell Multimodal Analyses Reveal Epigenomic and Transcriptomic Basis for Birth Defects in Maternal Diabetes. Nature Cardiovascular Research 2023. PMID: 39183978


  15. Maven BEJ, Gifford CA, Weilert M, Gonzalez-Teran B, Hüttenhain R, Pelonero A, Ivey KN, Samse-Knapp K, Kwong W, Gordon D, McGregor M, Nishino T, Okorie E, Rossman S, Costa MW, Krogan NJ, Zeitlinger J, Srivastava D. The multi-lineage transcription factor ISL1 controls cardiomyocyte cell fate through interaction with NKX2.5. Stem cell reports 2023. PMID: 37863045


  16. Zhou H, Yang J, Srinath C, Zeng A, Wu I, Leon EC, Qureshi TN, Reid CA, Nettesheim ER, Xu E, Duclos Z, Mohamed TMA, Farshidfar F, Fejes A, Liu J, Jones S, Feathers C, Chung TW, Jing F, Prince WS, Lin J, Yu P, Srivastava D, Hoey T, Ivey KN, Lombardi LM. Improved Cardiac Function in Postischemic Rats Using an Optimized Cardiac Reprogramming Cocktail Delivered in a Single Novel Adeno-Associated Virus. Circulation 2023. PMID: 37602409


  17. Yasvoina MV, Srivastava DP. Seeing the Forest for the Trees: Dissecting Causal Mechanisms for Specific Conditions Associated With Shared Genetic Risk. Biological psychiatry 2023. PMID: 37380253


  18. Young Jang M, Patel PN, Pereira AC, Willcox JAL, Haghighi A, Tai AC, Ito K, Morton SU, Gorham JM, McKean DM, DePalma SR, Bernstein D, Brueckner M, Chung WK, Giardini A, Goldmuntz E, Kaltman JR, Kim R, Newburger JW, Shen Y, Srivastava D, Tristani-Firouzi M, Gelb BD, Porter GA, Seidman CE, Seidman JG. Contribution of Previously Unrecognized RNA Splice-Altering Variants to Congenital Heart Disease. Circulation. Genomic and precision medicine 2023. PMID: 37165897


  19. Krup AL, Winchester SAB, Ranade SS, Agrawal A, Devine WP, Sinha T, Choudhary K, Dominguez MH, Thomas R, Black BL, Srivastava D, Bruneau BG. A Mesp1-dependent developmental breakpoint in transcriptional and epigenomic specification of early cardiac precursors. Development (Cambridge, England) 2023. PMID: 36994838


  20. Yu M, Aguirre M, Jia M, Gjoni K, Cordova-Palomera A, Munger C, Amgalan D, Rosa Ma X, Pereira A, Tcheandjieu C, Seidman C, Seidman J, Tristani-Firouzi M, Chung W, Goldmuntz E, Srivastava D, Loos RJF, Chami N, Cordell H, Dre?en M, Mueller-Myhsok B, Lahm H, Krane M, Pollard KS, Engreitz JM, Gagliano Taliun SA, Gelb BD, Priest JR. Oligogenic Architecture of Rare Noncoding Variants Distinguishes 4 Congenital Heart Disease Phenotypes. Circulation. Genomic and precision medicine 2023. PMID: 37026454


  21. Dutan Polit L, Eidhof I, McNeill RV, Warre-Cornish KM, Yde Ohki CM, Walter NM, Sala C, Verpelli C, Radtke F, Galderisi S, Mucci A, Collo G, Edenhofer F, Castrén ML, Réthelyi JM, Ejlersen M, Hohmann SS, Ilieva MS, Lukjanska R, Matuleviciute R, Michel TM, de Vrij FMS, Kushner SA, Lendemeijer B, Kittel-Schneider S, Ziegler GC, Gruber-Schoffnegger D, Pasterkamp RJ, Kasri A, Potier MC, Knoblich JA, Brüstle O, Peitz M, Pich EM, Harwood AJ, Abranches E, Falk A, Vernon AC, Grünblatt E, Srivastava DP. Recommendations, guidelines, and best practice for the use of human induced pluripotent stem cells for neuropharmacological studies of neuropsychiatric disorders. Neuroscience applied 2023. PMID: 40655966


  22. Couch ACM, Solomon S, Duarte RRR, Marrocu A, Sun Y, Sichlinger L, Matuleviciute R, Polit LD, Hanger B, Brown A, Kordasti S, Srivastava DP, Vernon AC. Acute IL-6 exposure triggers canonical IL6Ra signaling in hiPSC microglia, but not neural progenitor cells. Brain, behavior, and immunity 2023. PMID: 36781081


  23. Bock-Marquette I, Maar K, Maar S, Lippai B, Faskerti G, Gallyas F, Olson EN, Srivastava D. Thymosin beta-4 denotes new directions towards developing prosperous anti-aging regenerative therapies. International immunopharmacology 2023. PMID: 36709593


  24. Alexanian M, Padmanabhan A, Nishino T, Travers JG, Ye L, Lee CY, Sadagopan N, Huang Y, Pelonero A, Auclair K, Zhu A, Gonzalez Teran B, Flanigan W, Kim CK, Lumbao-Conradson K, Costa M, Jain R, Charo I, Haldar SM, Pollard KS, Vagnozzi RJ, McKinsey TA, Przytycki PF, Srivastava D. Chromatin Remodeling Drives Immune-Fibroblast Crosstalk in Heart Failure Pathogenesis. bioRxiv : the preprint server for biology 2023. PMID: 36711864


  25. Siafarikas N, Kirsebom BE, Srivastava DP, Eriksson CM, Auning E, Hessen E, Selbaek G, Blennow K, Aarsland D, Fladby T. Author Correction: Cerebrospinal fluid markers for synaptic function and Alzheimer type changes in late life depression. Scientific Reports 2022. PMID: 36258011


  26. Borsini A, Merrick B, Edgeworth J, Mandal G, Srivastava DP, Vernon AC, Nebbia G, Thuret S, Pariante CM. Neurogenesis is disrupted in human hippocampal progenitor cells upon exposure to serum samples from hospitalized COVID-19 patients with neurological symptoms. Molecular psychiatry 2022. PMID: 36195636


  27. Smith GA, Padmanabhan A, Lau BH, Pampana A, Li L, Lee CY, Pelonero A, Nishino T, Sadagopan N, Xia VQ, Jain R, Natarajan P, Wu RS, Black BL, Srivastava D, Shokat KM, Chorba JS. Cold shock domain-containing protein E1 is a posttranscriptional regulator of the LDL receptor. Science translational medicine 2022. PMID: 36103516


  28. Zhu L, Choudhary K, Gonzalez-Teran B, Ang YS, Thomas R, Stone NR, Liu L, Zhou P, Zhu C, Ruan H, Huang Y, Jin S, Pelonero A, Koback F, Padmanabhan A, Sadagopan N, Hsu A, Costa MW, Gifford CA, van Bemmel JG, Hüttenhain R, Vedantham V, Conklin BR, Black BL, Bruneau BG, Steinmetz L, Krogan NJ, Pollard KS, Srivastava D. Transcription Factor GATA4 Regulates Cell Type-Specific Splicing Through Direct Interaction With RNA in Human Induced Pluripotent Stem Cell-Derived Cardiac Progenitors. Circulation 2022. PMID: 35938400


  29. Bhat A, Irizar H, Couch ACM, Raval P, Duarte RRR, Dutan Polit L, Hanger B, Powell T, Deans PJM, Shum C, Nagy R, McAlonan G, Iyegbe CO, Price J, Bramon E, Bhattacharyya S, Vernon AC, Srivastava DP. Attenuated transcriptional response to pro-inflammatory cytokines in schizophrenia hiPSC-derived neural progenitor cells. Brain, behavior, and immunity 2022. PMID: 35716830


  30. Srivastava D. Cellular cross-talk in heart repair. Science (New York, N.Y.) 2022. PMID: 35709257


  31. Massrali A, Adhya D, Srivastava DP, Baron-Cohen S, Kotter MR. Corrigendum: Virus-Induced Maternal Immune Activation as an Environmental Factor in the Etiology of Autism and Schizophrenia. Frontiers in neuroscience 2022. PMID: 35757530


  32. Little M, Morrison SJ, Rossant J, Srivastava D, Daley GQ. Anniversary reflections: ISSCR presidents on 20 years of progress. 2022. PMID: 35659873


  33. Massrali A, Adhya D, Srivastava DP, Baron-Cohen S, Kotter MR. Virus-Induced Maternal Immune Activation as an Environmental Factor in the Etiology of Autism and Schizophrenia. Frontiers in neuroscience 2022. PMID: 35495047


  34. Willcox JAL, Geiger JT, Morton SU, McKean D, Quiat D, Gorham JM, Tai AC, DePalma S, Bernstein D, Brueckner M, Chung WK, Giardini A, Goldmuntz E, Kaltman JR, Kim R, Newburger JW, Shen Y, Srivastava D, Tristani-Firouzi M, Gelb B, Porter GA, Seidman JG, Seidman CE. Neither cardiac mitochondrial DNA variation nor copy number contribute to congenital heart disease risk. 2022. PMID: 35397206


  35. Gonzalez-Teran B, Pittman M, Felix F, Thomas R, Richmond-Buccola D, Hüttenhain R, Choudhary K, Moroni E, Costa MW, Huang Y, Padmanabhan A, Alexanian M, Lee CY, Maven BEJ, Samse-Knapp K, Morton SU, McGregor M, Gifford CA, Seidman JG, Seidman CE, Gelb BD, Colombo G, Conklin BR, Black BL, Bruneau BG, Krogan NJ, Pollard KS, Srivastava D. Transcription factor protein interactomes reveal genetic determinants in heart disease. 2022. PMID: 35182466


  36. Abouleisa RRE, Salama ABM, Ou Q, Tang XL, Solanki M, Guo Y, Nong Y, McNally L, Lorkiewicz PK, Kassem KM, Ahern BM, Choudhary K, Thomas R, Huang Y, Juhardeen HR, Siddique A, Ifthikar Z, Hammad SK, El-Baz AS, Ivey KN, Conklin DJ, Satin J, Hill BG, Srivastava D, Bolli R, Mohamed TMA. Transient Cell Cycle Induction in Cardiomyocytes to Treat Subacute Ischemic Heart Failure. 2022. PMID: 35061545


  37. Linares-Saldana R, Kim W, Bolar NA, Zhang H, Koch-Bojalad BA, Yoon S, Shah PP, Karnay A, Park DS, Luppino JM, Nguyen SC, Padmanabhan A, Smith CL, Poleshko A, Wang Q, Li L, Srivastava D, Vahedi G, Eom GH, Blobel GA, Joyce EF, Jain R. Publisher Correction: BRD4 orchestrates genome folding to promote neural crest differentiation. 2021. PMID: 34725478


  38. Siafarikas N, Kirsebom BE, Srivastava DP, Eriksson CM, Auning E, Hessen E, Selbaek G, Blennow K, Aarsland D, Fladby T. Cerebrospinal fluid markers for synaptic function and Alzheimer type changes in late life depression. Scientific Reports 2021. PMID: 34645914


  39. Linares-Saldana R, Kim W, Bolar NA, Zhang H, Koch-Bojalad BA, Yoon S, Shah PP, Karnay A, Park DS, Luppino JM, Nguyen SC, Padmanabhan A, Smith CL, Poleshko A, Wang Q, Li L, Srivastava D, Vahedi G, Eom GH, Blobel GA, Joyce EF, Jain R. BRD4 orchestrates genome folding to promote neural crest differentiation. 2021. PMID: 34611363


  40. Srivastava D. Modeling Human Cardiac Chambers with Organoids. The New England journal of medicine 2021. PMID: 34437788


  41. He BJ, Merriman AF, Cakulev I, Stambler BS, Srivastava D, Scheinman MM. Ebstein's Anomaly: Review of Arrhythmia Types and Morphogenesis of the Anomaly. JACC. Clinical electrophysiology 2021. PMID: 34454887


  42. Couch ACM, Berger T, Hanger B, Matuleviciute R, Srivastava DP, Thuret S, Vernon AC. Maternal immune activation primes deficiencies in adult hippocampal neurogenesis. Brain, behavior, and immunity 2021. PMID: 34352366


  43. Steg LC, Shireby GL, Imm J, Davies JP, Franklin A, Flynn R, Namboori SC, Bhinge A, Jeffries AR, Burrage J, Neilson GWA, Walker EM, Perfect LW, Price J, McAlonan G, Srivastava DP, Bray NJ, Cope EL, Jones KM, Allen ND, Pishva E, Dempster EL, Lunnon K, Mill J, Hannon E. Novel epigenetic clock for fetal brain development predicts prenatal age for cellular stem cell models and derived neurons. Molecular brain 2021. PMID: 34174924


  44. Alexanian M, Przytycki PF, Micheletti R, Padmanabhan A, Ye L, Travers JG, Gonzalez-Teran B, Silva AC, Duan Q, Ranade SS, Felix F, Linares-Saldana R, Li L, Lee CY, Sadagopan N, Pelonero A, Huang Y, Andreoletti G, Jain R, McKinsey TA, Rosenfeld MG, Gifford CA, Pollard KS, Haldar SM, Srivastava D. A transcriptional switch governs fibroblast activation in heart disease. Nature 2021. PMID: 34163071


  45. Morton SU, Shimamura A, Newburger PE, Opotowsky AR, Quiat D, Pereira AC, Jin SC, Gurvitz M, Brueckner M, Chung WK, Shen Y, Bernstein D, Gelb BD, Giardini A, Goldmuntz E, Kim RW, Lifton RP, Porter GA, Srivastava D, Tristani-Firouzi M, Newburger JW, Seidman JG, Seidman CE. Association of Damaging Variants in Genes With Increased Cancer Risk Among Patients With Congenital Heart Disease. 2021. PMID: 33084842


  46. Srivastava D, McDevitt TC. Mouse gastruloids take heart. Nature reviews. Cardiology 2021. PMID: 33414560


  47. Halff EF, Cotel MC, Natesan S, McQuade R, Ottley CJ, Srivastava DP, Howes OD, Vernon AC. Effects of chronic exposure to haloperidol, olanzapine or lithium on SV2A and NLGN synaptic puncta in the rat frontal cortex. Behavioural brain research 2021. PMID: 33636238


  48. Adhya D, Chennell G, Crowe JA, Valencia-Alarcón EP, Seyforth J, Hosny NA, Yasvoina MV, Forster R, Baron-Cohen S, Vernon AC, Srivastava DP. Application of Airy beam light sheet microscopy to examine early neurodevelopmental structures in 3D hiPSC-derived human cortical spheroids. Molecular autism 2021. PMID: 33482917


  49. Mummery C, Little M, Lin H, Clark A, Zaret K, ISSCR Board 2020–2021 , Srivastava D, Fuchs E, Watt F, Temple S. Mentorship in Science: Response to AlShebli et al., Nature Communications 2020. Stem cell reports 2021. PMID: 33440177


  50. Theodoris CV, Zhou P, Liu L, Zhang Y, Nishino T, Huang Y, Kostina A, Ranade SS, Gifford CA, Uspenskiy V, Malashicheva A, Ding S, Srivastava D. Network-based screen in iPSC-derived cells reveals therapeutic candidate for heart valve disease. Science (New York, N.Y.) 2020. PMID: 33303684


  51. Batra S, Malhotra R, Kumar V, Srivastava DN, Backstein D, Pandit H. Superior patient satisfaction in medial pivot as compared to posterior stabilized total knee arthroplasty: a prospective randomized study. Knee surgery, sports traumatology, arthroscopy : official journal of the ESSKA 2020. PMID: 33155090


  52. Padmanabhan A, Alexanian M, Linares-Saldana R, González-Terán B, Andreoletti G, Huang Y, Connolly AJ, Kim W, Hsu A, Duan Q, Winchester SAB, Felix F, Perez-Bermejo JA, Wang Q, Li L, Shah PP, Haldar SM, Jain R, Srivastava D. BRD4 (Bromodomain-Containing Protein 4) Interacts with GATA4 (GATA Binding Protein 4) to Govern Mitochondrial Homeostasis in Adult Cardiomyocytes. Circulation 2020. PMID: 33094644


  53. Sharma A, Wasson LK, Willcox JA, Morton SU, Gorham JM, DeLaughter DM, Neyazi M, Schmid M, Agarwal R, Jang MY, Toepfer CN, Ward T, Kim Y, Pereira AC, DePalma SR, Tai A, Kim S, Conner D, Bernstein D, Gelb BD, Chung WK, Goldmuntz E, Porter G, Tristani-Firouzi M, Srivastava D, Seidman JG, Seidman CE, Pediatric Cardiac Genomics Consortium. GATA6 mutations in hiPSCs inform mechanisms for maldevelopment of the heart, pancreas, and diaphragm. eLife 2020. PMID: 33054971


  54. Warre-Cornish K, Perfect L, Nagy R, Duarte RRR, Reid MJ, Raval P, Mueller A, Evans AL, Couch A, Ghevaert C, McAlonan G, Loth E, Murphy D, Powell TR, Vernon AC, Srivastava DP, Price J. Interferon-γ signaling in human iPSC-derived neurons recapitulates neurodevelopmental disorder phenotypes. Science advances 2020. PMID: 32875100


  55. Boskovski MT, Homsy J, Nathan M, Sleeper LA, Morton S, Manheimer KB, Tai A, Gorham J, Lewis M, Swartz M, Alfieris GM, Bacha EA, Karimi M, Meyer D, Nguyen K, Bernstein D, Romano-Adesman A, Porter GA, Goldmuntz E, Chung WK, Srivastava D, Kaltman JR, Tristani-Firouzi M, Lifton R, Roberts AE, Gaynor JW, Gelb BD, Kim R, Seidman JG, Brueckner M, Mayer JE, Newburger JW, Seidman CE. De Novo Damaging Variants, Clinical Phenotypes, and Post-Operative Outcomes in Congenital Heart Disease. Circulation. Genomic and precision medicine 2020. PMID: 32812804


  56. Richter F, Morton SU, Kim SW, Kitaygorodsky A, Wasson LK, Chen KM, Zhou J, Qi H, Patel N, DePalma SR, Parfenov M, Homsy J, Gorham JM, Manheimer KB, Velinder M, Farrell A, Marth G, Schadt EE, Kaltman JR, Newburger JW, Giardini A, Goldmuntz E, Brueckner M, Kim R, Porter GA, Bernstein D, Chung WK, Srivastava D, Tristani-Firouzi M, Troyanskaya OG, Dickel DE, Shen Y, Seidman JG, Seidman CE, Gelb BD. Genomic analyses implicate noncoding de novo variants in congenital heart disease. Nature genetics 2020. PMID: 32601476


  57. Hosny NA, Seyforth JA, Spickermann G, Mitchell TJ, Almada P, Chesters R, Mitchell SJ, Chennell G, Vernon AC, Cho K, Srivastava DP, Forster R, Vettenburg T. Planar Airy beam light-sheet for two-photon microscopy. Biomedical optics express 2020. PMID: 33014576


  58. Sellers KJ, Denley MCS, Saito A, Foster EM, Salgarella I, Delogu A, Kamiya A, Srivastava DP. Brain-synthesized oestrogens regulate cortical migration in a sexually divergent manner. The European journal of neuroscience 2020. PMID: 32314480


  59. Srivastava D. Creating Opportunities to Advance Stem Cell Science: 2019-2020 Year in Review. Stem cell reports 2020. PMID: 32521249


  60. Hsieh A, Morton SU, Willcox JAL, Gorham JM, Tai AC, Qi H, DePalma S, McKean D, Griffin E, Manheimer KB, Bernstein D, Kim RW, Newburger JW, Porter GA, Srivastava D, Tristani-Firouzi M, Brueckner M, Lifton RP, Goldmuntz E, Gelb BD, Chung WK, Seidman CE, Seidman JG, Shen Y. EM-mosaic detects mosaic point mutations that contribute to congenital heart disease. Genome medicine 2020. PMID: 32349777


  61. Erli F, Palmos AB, Raval P, Mukherjee J, Sellers KJ, Gatford NJF, Moss SJ, Brandon NJ, Penzes P, Srivastava DP. Estradiol reverses excitatory synapse loss in a cellular model of neuropsychiatric disorders. Translational psychiatry 2020. PMID: 32066698


  62. Shum C, Dutan L, Annuario E, Warre-Cornish K, Taylor SE, Taylor RD, Andreae LC, Buckley NJ, Price J, Bhattacharyya S, Srivastava DP. Δ9-tetrahydrocannabinol and 2-AG decreases neurite outgrowth and differentially affects ERK1/2 and Akt signaling in hiPSC-derived cortical neurons. Molecular and cellular neurosciences 2020. PMID: 31917333


  63. Stratton MS, Bagchi RA, Felisbino MB, Hirsch RA, Smith HE, Riching AS, Enyart BY, Koch KA, Cavasin MA, Alexanian M, Song K, Qi J, Lemieux ME, Srivastava D, Lam MPY, Haldar SM, Lin CY, McKinsey TA. Dynamic Chromatin Targeting of BRD4 Stimulates Cardiac Fibroblast Activation. Circulation research 2019. PMID: 31409188


  64. de Soysa TY, Ranade SS, Okawa S, Ravichandran S, Huang Y, Salunga HT, Schricker A, Del Sol A, Gifford CA, Srivastava D. Single-cell analysis of cardiogenesis reveals basis for organ-level developmental defects. Nature 2019. PMID: 31341279


  65. Xie Z, Penzes P, Srivastava DP. Exchange protein directly activated by cAMP 2 is required for corticotropin-releasing hormone-mediated spine loss. The European journal of neuroscience 2019. PMID: 31199033


  66. Stone NR, Gifford CA, Thomas R, Pratt KJB, Samse-Knapp K, Mohamed TMA, Radzinsky EM, Schricker A, Ye L, Yu P, van Bemmel JG, Ivey KN, Pollard KS, Srivastava D. Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming. Cell stem cell 2019. PMID: 31271750


  67. Gifford CA, Ranade SS, Samarakoon R, Salunga HT, de Soysa TY, Huang Y, Zhou P, Elfenbein A, Wyman SK, Bui YK, Cordes Metzler KR, Ursell P, Ivey KN, Srivastava D. Oligogenic inheritance of a human heart disease involving a genetic modifier. Science (New York, N.Y.) 2019. PMID: 31147515


  68. Jones KA, Sumiya M, Woolfrey KM, Srivastava DP, Penzes P. Loss of EPAC2 alters dendritic spine morphology and inhibitory synapse density. Molecular and cellular neurosciences 2019. PMID: 31059774


  69. Samal E, Evangelista M, Galang G, Srivastava D, Zhao Y, Vedantham V. Premature MicroRNA-1 Expression Causes Hypoplasia of the Cardiac Ventricular Conduction System. Frontiers in physiology 2019. PMID: 30936836


  70. Jones KA, Luo Y, Dukes-Rimsky L, Srivastava DP, Koul-Tewari R, Russell TA, Shapiro LP, Srivastava AK, Penzes P. Neurodevelopmental disorder-associated ZBTB20 gene variants affect dendritic and synaptic structure. PloS one 2018. PMID: 30281617


  71. Willsey AJ, Morris MT, Wang S, Willsey HR, Sun N, Teerikorpi N, Baum TB, Cagney G, Bender KJ, Desai TA, Srivastava D, Davis GW, Doudna J, Chang E, Sohal V, Lowenstein DH, Li H, Agard D, Keiser MJ, Shoichet B, von Zastrow M, Mucke L, Finkbeiner S, Gan L, Sestan N, Ward ME, Huttenhain R, Nowakowski TJ, Bellen HJ, Frank LM, Khokha MK, Lifton RP, Kampmann M, Ideker T, State MW, Krogan NJ. The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders. Cell 2018. PMID: 30053424


  72. Manheimer KB, Patel N, Richter F, Gorham J, Tai AC, Homsy J, Boskovski MT, Parfenov M, Goldmuntz E, Chung WK, Brueckner M, Tristani-Firouzi M, Srivastava D, Seidman JG, Seidman CE, Gelb BD, Sharp AJ. Robust identification of deletions in exome and genome sequence data based on clustering of Mendelian errors. Human mutation 2018. PMID: 29527824


  73. Mohamed TMA, Ang YS, Radzinsky E, Zhou P, Huang Y, Elfenbein A, Foley A, Magnitsky S, Srivastava D. Regulation of Cell Cycle to Stimulate Adult Cardiomyocyte Proliferation and Cardiac Regeneration. Cell 2018. PMID: 29502971


  74. Sellers KJ, Elliott C, Jackson J, Ghosh A, Ribe E, Rojo AI, Jarosz-Griffiths HH, Watson IA, Xia W, Semenov M, Morin P, Hooper NM, Porter R, Preston J, Al-Shawi R, Baillie G, Lovestone S, Cuadrado A, Harte M, Simons P, Srivastava DP, Killick R. Amyloid β synaptotoxicity is Wnt-PCP dependent and blocked by fasudil. Alzheimer's & dementia : the journal of the Alzheimer's Association 2017. PMID: 29055813


  75. Jin SC, Homsy J, Zaidi S, Lu Q, Morton S, DePalma SR, Zeng X, Qi H, Chang W, Sierant MC, Hung WC, Haider S, Zhang J, Knight J, Bjornson RD, Castaldi C, Tikhonoa IR, Bilguvar K, Mane SM, Sanders SJ, Mital S, Russell MW, Gaynor JW, Deanfield J, Giardini A, Porter GA, Srivastava D, Lo CW, Shen Y, Watkins WS, Yandell M, Yost HJ, Tristani-Firouzi M, Newburger JW, Roberts AE, Kim R, Zhao H, Kaltman JR, Goldmuntz E, Chung WK, Seidman JG, Gelb BD, Seidman CE, Lifton RP, Brueckner M. Contribution of rare inherited and de novo variants in 2,871 congenital heart disease probands. Nature genetics 2017. PMID: 28991257


  76. Judge LM, Perez-Bermejo JA, Truong A, Ribeiro AJ, Yoo JC, Jensen CL, Mandegar MA, Huebsch N, Kaake RM, So PL, Srivastava D, Pruitt BL, Krogan NJ, Conklin BR. A BAG3 chaperone complex maintains cardiomyocyte function during proteotoxic stress. JCI insight 2017. PMID: 28724793


  77. Duan Q, McMahon S, Anand P, Shah H, Thomas S, Salunga HT, Huang Y, Zhang R, Sahadevan A, Lemieux ME, Brown JD, Srivastava D, Bradner JE, McKinsey TA, Haldar SM. BET bromodomain inhibition suppresses innate inflammatory and profibrotic transcriptional networks in heart failure. Science translational medicine 2017. PMID: 28515341


  78. Ribeiro AJS, Schwab O, Mandegar MA, Ang YS, Conklin BR, Srivastava D, Pruitt BL. Multi-Imaging Method to Assay the Contractile Mechanical Output of Micropatterned Human iPSC-Derived Cardiac Myocytes. Circulation research 2017. PMID: 28400398


  79. Theodoris CV, Mourkioti F, Huang Y, Ranade SS, Liu L, Blau HM, Srivastava D. Long telomeres protect against age-dependent cardiac disease caused by NOTCH1 haploinsufficiency. The Journal of clinical investigation 2017. PMID: 28346225


  80. Jun-yi Zhu, Amy Heidersbach, Irfan S. Kathiriya, Bayardo I. Garay, Kathryn N. Ivey, Deepak Srivastava, Zhe Han, Isabelle N. King. The E3 ubiquitin ligase Nedd4/Nedd4L is directly regulated by microRNA 1. Journal of cell science 2017. PMID:


  81. Zhu JY, Heidersbach A, Kathiriya IS, Garay BI, Ivey KN, Srivastava D, Han Z, King IN. The E3 ubiquitin ligase Nedd4/Nedd4L is directly regulated by microRNA 1. Development (Cambridge, England) 2017. PMID: 28246214


  82. Ang YS, Rivas RN, Ribeiro AJS, Srivas R, Rivera J, Stone NR, Pratt K, Mohamed TMA, Fu JD, Spencer CI, Tippens ND, Li M, Narasimha A, Radzinsky E, Moon-Grady AJ, Yu H, Pruitt BL, Snyder MP, Srivastava D. Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis. Cell 2016. PMID: 27984724


  83. Mohamed TM, Stone NR, Berry EC, Radzinsky E, Huang Y, Pratt K, Ang YS, Yu P, Wang H, Tang S, Magnitsky S, Ding S, Ivey KN, Srivastava D. Chemical Enhancement of In Vitro and In Vivo Direct Cardiac Reprogramming. Circulation 2016. PMID: 27834668


  84. Wang Z, Zhang XJ, Ji YX, Zhang P, Deng KQ, Gong J, Ren S, Wang X, Chen I, Wang H, Gao C, Yokota T, Ang YS, Li S, Cass A, Vondriska TM, Li G, Deb A, Srivastava D, Yang HT, Xiao X, Li H, Wang Y. The long noncoding RNA Chaer defines an epigenetic checkpoint in cardiac hypertrophy. Nature medicine 2016. PMID: 27618650


  85. Srivastava D, DeWitt N. In Vivo Cellular Reprogramming: The Next Generation. Cell 2016. PMID: 27610565


  86. Barruet E, Morales BM, Lwin W, White MP, Theodoris CV, Kim H, Urrutia A, Wong SA, Srivastava D, Hsiao EC. The ACVR1 R206H mutation found in fibrodysplasia ossificans progressiva increases human induced pluripotent stem cell-derived endothelial cell formation and collagen production through BMP-mediated SMAD1/5/8 signaling. Stem cell research & therapy 2016. PMID: 27530160


  87. Sia J, Yu P, Srivastava D, Li S. Effect of biophysical cues on reprogramming to cardiomyocytes. Biomaterials 2016. PMID: 27376554


  88. Deepak Srivastava, Joseph T. C. Shieh. Molecular Regulation of Cardiogenesis. Epstein\u0027s Inborn Errors of Development 2016. PMID:


  89. Haldar SM, Srivastava D. Sarcomeres and Cardiac Growth: Tension in the Relationship. Trends in molecular medicine 2016. PMID: 27237981


  90. Cao N, Huang Y, Zheng J, Spencer CI, Zhang Y, Fu JD, Nie B, Xie M, Zhang M, Wang H, Ma T, Xu T, Shi G, Srivastava D, Ding S. Conversion of human fibroblasts into functional cardiomyocytes by small molecules. Science (New York, N.Y.) 2016. PMID: 27127239


  91. Huebsch N, Loskill P, Deveshwar N, Spencer CI, Judge LM, Mandegar MA, Fox CB, Mohamed TM, Ma Z, Mathur A, Sheehan AM, Truong A, Saxton M, Yoo J, Srivastava D, Desai TA, So PL, Healy KE, Conklin BR. Miniaturized iPS-Cell-Derived Cardiac Muscles for Physiologically Relevant Drug Response Analyses. Scientific Reports 2016. PMID: 27095412


  92. Lai KO, Jordan BA, Ma XM, Srivastava DP, Tolias KF. Molecular Mechanisms of Dendritic Spine Development and Plasticity. Neural plasticity 2016. PMID: 27127656


  93. Zhang Y, Cao N, Huang Y, Spencer CI, Fu JD, Yu C, Liu K, Nie B, Xu T, Li K, Xu S, Bruneau BG, Srivastava D, Ding S. Expandable Cardiovascular Progenitor Cells Reprogrammed from Fibroblasts. Cell stem cell 2016. PMID: 26942852


  94. Alexandre J. Ribeiro, Yen-Sin Ang, Robin E. Wilson, Renee N. Rivas, Deepak Srivastava, Beth L. Pruitt. A Tuned Tension Regulates the Contractility of Cardiomyocytes Differentiated from Induced Pluripotent Stem Cells. Biophysical journal 2016. PMID:


  95. Kime C, Mandegar MA, Srivastava D, Yamanaka S, Conklin BR, Rand TA. Efficient CRISPR/Cas9-Based Genome Engineering in Human Pluripotent Stem Cells. Current protocols in human genetics 2016. PMID: 26724721


  96. Gifford CA, Srivastava D. Heart disease modelling adds a Notch to its belt. Nature cell biology 2016. PMID: 26693916


  97. Deepak Srivastava. Reprogramming Approaches to Cardiovascular Disease: From Developmental Biology to Regenerative Medicine. Etiology and Morphogenesis of Congenital Heart Disease 2016. PMID:


  98. Srivastava D, Yu P. Recent advances in direct cardiac reprogramming. Current opinion in genetics & development 2015. PMID: 26454285


  99. Kime C, Rand TA, Ivey KN, Srivastava D, Yamanaka S, Tomoda K. Practical Integration-Free Episomal Methods for Generating Human Induced Pluripotent Stem Cells. Current protocols in human genetics 2015. PMID: 26439714


  100. Ribeiro AJ, Ang YS, Fu JD, Rivas RN, Mohamed TM, Higgs GC, Srivastava D, Pruitt BL. Contractility of single cardiomyocytes differentiated from pluripotent stem cells depends on physiological shape and substrate stiffness. Proceedings of the National Academy of Sciences of the United States of America 2015. PMID: 26417073


  101. Ivey KN, Srivastava D. microRNAs as Developmental Regulators. Cold Spring Harbor perspectives in biology 2015. PMID: 26134312


  102. White MP, Theodoris CV, Liu L, Collins WJ, Blue KW, Lee JH, Meng X, Robbins RC, Ivey KN, Srivastava D. NOTCH1 regulates matrix gla protein and calcification gene networks in human valve endothelium. Journal of molecular and cellular cardiology 2015. PMID: 25871831


  103. Rasmussen TL, Ma Y, Park CY, Harriss J, Pierce SA, Dekker JD, Valenzuela N, Srivastava D, Schwartz RJ, Stewart MD, Tucker HO. Smyd1 facilitates heart development by antagonizing oxidative and ER stress responses. PloS one 2015. PMID: 25803368


  104. Theodoris CV, Li M, White MP, Liu L, He D, Pollard KS, Bruneau BG, Srivastava D. Human disease modeling reveals integrated transcriptional and epigenetic mechanisms of NOTCH1 haploinsufficiency. Cell 2015. PMID: 25768904


  105. Yadav AK, Sharma R, Kandasamy D, Bhalla AS, Gamanagatti S, Srivastava DN, Upadhyay AD, Garg PK. Perfusion CT: can it predict the development of pancreatic necrosis in early stage of severe acute pancreatitis? Abdominal imaging 2015. PMID: 25173791


  106. Vedantham V, Galang G, Evangelista M, Deo RC, Srivastava D. RNA sequencing of mouse sinoatrial node reveals an upstream regulatory role for Islet-1 in cardiac pacemaker cells. Circulation research 2015. PMID: 25623957


  107. Fu JD, Srivastava D. Direct reprogramming of fibroblasts into cardiomyocytes for cardiac regenerative medicine. Circulation journal : official journal of the Japanese Circulation Society 2015. PMID: 25744738


  108. Ang YS, Srivastava D. Oxygen: double-edged sword in cardiac function and repair. Circulation research 2014. PMID: 25342770


  109. Funato N, Nakamura M, Richardson JA, Srivastava D, Yanagisawa H. Loss of Tbx1 induces bone phenotypes similar to cleidocranial dysplasia. Human molecular genetics 2014. PMID: 25209980


  110. Hua LL, Vedantham V, Barnes RM, Hu J, Robinson AS, Bressan M, Srivastava D, Black BL. Specification of the mouse cardiac conduction system in the absence of Endothelin signaling. Developmental biology 2014. PMID: 25050930


  111. Hu H, Roach JC, Coon H, Guthery SL, Voelkerding KV, Margraf RL, Durtschi JD, Tavtigian SV, Shankaracharya , Wu W, Scheet P, Wang S, Xing J, Glusman G, Hubley R, Li H, Garg V, Moore B, Hood L, Galas DJ, Srivastava D, Reese MG, Jorde LB, Yandell M, Huff CD. A unified test of linkage analysis and rare-variant association for analysis of pedigree sequence data. Nature biotechnology 2014. PMID: 24837662


  112. King IN, Yartseva V, Salas D, Kumar A, Heidersbach A, Ando DM, Stallings NR, Elliott JL, Srivastava D, Ivey KN. The RNA-binding protein TDP-43 selectively disrupts microRNA-1/206 incorporation into the RNA-induced silencing complex. The Journal of biological chemistry 2014. PMID: 24719334


  113. Wang H, Cao N, Spencer CI, Nie B, Ma T, Xu T, Zhang Y, Wang X, Srivastava D, Ding S. Small molecules enable cardiac reprogramming of mouse fibroblasts with a single factor, Oct4. Cell reports 2014. PMID: 24561253


  114. Bruneau BG, Srivastava D. Congenital heart disease: entering a new era of human genetics. Circulation research 2014. PMID: 24526674


  115. Dias GP, Bevilaqua MC, da Luz AC, Fleming RL, de Carvalho LA, Cocks G, Beckman D, Hosken LC, de Sant'Anna Machado W, Corrêa-e-Castro AC, Mousovich-Neto F, de Castro Gomes V, Bastos Gde N, Kubrusly RC, da Costa VM, Srivastava D, Landeira-Fernandez J, Nardi AE, Thuret S, Gardino PF. Hippocampal biomarkers of fear memory in an animal model of generalized anxiety disorder. Behavioural brain research 2014. PMID: 24462725


  116. Heidersbach A, Saxby C, Carver-Moore K, Huang Y, Ang YS, de Jong PJ, Ivey KN, Srivastava D. microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart. eLife 2013. PMID: 24252873


  117. Worringer KA, Rand TA, Hayashi Y, Sami S, Takahashi K, Tanabe K, Narita M, Srivastava D, Yamanaka S. The let-7/LIN-41 pathway regulates reprogramming to human induced pluripotent stem cells by controlling expression of prodifferentiation genes. Cell stem cell 2013. PMID: 24239284


  118. Qian L, Srivastava D. Direct cardiac reprogramming: from developmental biology to cardiac regeneration. Circulation research 2013. PMID: 24030021


  119. Srivastava D, Berry EC. Cardiac reprogramming: from mouse toward man. Current opinion in genetics & development 2013. PMID: 23993230


  120. Fu JD, Stone NR, Liu L, Spencer CI, Qian L, Hayashi Y, Delgado-Olguin P, Ding S, Bruneau BG, Srivastava D. Direct reprogramming of human fibroblasts toward a cardiomyocyte-like state. Stem cell reports 2013. PMID: 24319660


  121. Cheng P, Andersen P, Hassel D, Kaynak BL, Limphong P, Juergensen L, Kwon C, Srivastava D. Fibronectin mediates mesendodermal cell fate decisions. Development (Cambridge, England) 2013. PMID: 23715551


  122. Qian L, Berry EC, Fu JD, Ieda M, Srivastava D. Reprogramming of mouse fibroblasts into cardiomyocyte-like cells in vitro. Nature protocols 2013. PMID: 23722259


  123. Srivastava D, Heidersbach AJ. Small solutions to big problems: microRNAs for cardiac regeneration. Circulation research 2013. PMID: 23704215


  124. Spindler MJ, Burmeister BT, Huang Y, Hsiao EC, Salomonis N, Scott MJ, Srivastava D, Carnegie GK, Conklin BR. AKAP13 Rho-GEF and PKD-binding domain deficient mice develop normally but have an abnormal response to ß-adrenergic-induced cardiac hypertrophy. PloS one 2013. PMID: 23658642


  125. Srivastava D, Cordes Metzler KR. Fending for a Braveheart. The EMBO journal 2013. PMID: 23524853


  126. Limphong P, Zhang H, Christians E, Liu Q, Riedel M, Ivey K, Cheng P, Mitzelfelt K, Taylor G, Winge D, Srivastava D, Benjamin I. Modeling human protein aggregation cardiomyopathy using murine induced pluripotent stem cells. Stem cells translational medicine 2013. PMID: 23430692


  127. White MP, Rufaihah AJ, Liu L, Ghebremariam YT, Ivey KN, Cooke JP, Srivastava D. Limited gene expression variation in human embryonic stem cell and induced pluripotent stem cell-derived endothelial cells. Stem cells (Dayton, Ohio) 2013. PMID: 23079999


  128. Ivey KN
    Srivastava D. Tam PPL, Nelson WJ, Rossant J, Eds. Mammalian Development: Networks, Switches, and Morphogenetic Processes MicroRNAs as developmental regulators 2013. PMID:


  129. Yen K Bui, Kimberly R Cordes, Samantha Hastie, Deepak Srivastava. Abstract 19764: Cardiac Disease Modeling of Familial Left Ventricular Noncompaction Cardiomyopathy Using Induced Pluripotent Stem Cells. Circulation 2012. PMID:


  130. Plath K, Srivastava D, Alvarez-Buylla A, Tanaka EM, Kriegstein AR. Stem cells in the land of the rising sun: ISSCR 2012. Cell stem cell 2012. PMID: 23122288


  131. Vedantham V, Evangelista M, Huang Y, Srivastava D. Spatiotemporal regulation of an Hcn4 enhancer defines a role for Mef2c and HDACs in cardiac electrical patterning. Developmental biology 2012. PMID: 23085412


  132. Farina NH, Hausburg M, Betta ND, Pulliam C, Srivastava D, Cornelison D, Olwin BB. A role for RNA post-transcriptional regulation in satellite cell activation. Skeletal muscle 2012. PMID: 23046558


  133. Srivastava D, Ieda M, Fu J, Qian L. Cardiac repair with thymosin ß4 and cardiac reprogramming factors. Annals of the New York Academy of Sciences 2012. PMID: 23050819


  134. Wamstad JA, Alexander JM, Truty RM, Shrikumar A, Li F, Eilertson KE, Ding H, Wylie JN, Pico AR, Capra JA, Erwin G, Kattman SJ, Keller GM, Srivastava D, Levine SS, Pollard KS, Holloway AK, Boyer LA, Bruneau BG. Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage. Cell 2012. PMID: 22981692


  135. Hassel D, Cheng P, White MP, Ivey KN, Kroll J, Augustin HG, Katus HA, Stainier DY, Srivastava D. MicroRNA-10 regulates the angiogenic behavior of zebrafish and human endothelial cells by promoting vascular endothelial growth factor signaling. Circulation research 2012. PMID: 22955733


  136. Srivastava DP, Jones KA, Woolfrey KM, Burgdorf J, Russell TA, Kalmbach A, Lee H, Yang C, Bradberry MM, Wokosin D, Moskal JR, Casanova MF, Waters J, Penzes P. Social, communication, and cortical structural impairments in Epac2-deficient mice. The Journal of neuroscience : the official journal of the Society for Neuroscience 2012. PMID: 22915127


  137. Tomoda K, Takahashi K, Leung K, Okada A, Narita M, Yamada NA, Eilertson KE, Tsang P, Baba S, White MP, Sami S, Srivastava D, Conklin BR, Panning B, Yamanaka S. Derivation conditions impact X-inactivation status in female human induced pluripotent stem cells. Cell stem cell 2012. PMID: 22770243


  138. Srivastava D, Ieda M. Critical factors for cardiac reprogramming. Circulation research 2012. PMID: 22723217


  139. Qian L, Huang Y, Spencer CI, Foley A, Vedantham V, Liu L, Conway SJ, Fu JD, Srivastava D. In vivo reprogramming of murine cardiac fibroblasts into induced cardiomyocytes. Nature 2012. PMID: 22522929


  140. Misra C, Sachan N, McNally CR, Koenig SN, Nichols HA, Guggilam A, Lucchesi PA, Pu WT, Srivastava D, Garg V. Congenital heart disease-causing Gata4 mutation displays functional deficits in vivo. PLoS genetics 2012. PMID: 22589735


  141. Park CY, Jeker LT, Carver-Moore K, Oh A, Liu HJ, Cameron R, Richards H, Li Z, Adler D, Yoshinaga Y, Martinez M, Nefadov M, Abbas AK, Weiss A, Lanier LL, de Jong PJ, Bluestone JA, Srivastava D, McManus MT. A resource for the conditional ablation of microRNAs in the mouse. Cell reports 2012. PMID: 22570807


  142. Deepak Srivastava. microRNA regulation of cardiac cell fate, morphogenesis and function. The FASEB Journal 2012. PMID:


  143. Kathiresan S, Srivastava D. Genetics of human cardiovascular disease. Cell 2012. PMID: 22424232


  144. Funato N, Nakamura M, Richardson JA, Srivastava D, Yanagisawa H. Tbx1 regulates oral epithelial adhesion and palatal development. Human molecular genetics 2012. PMID: 22371266


  145. Bernstein HS, Srivastava D. Stem cell therapy for cardiac disease. Pediatric research 2012. PMID: 22430385


  146. Baldwin HS
    Srivastava D. Allen HD, Driscoll DJ, Shaddy RE, Feltes TF, Eds. Moss and Adams' Heart Disease in Infants, Children and Adolescents Molecular determinants of cardiac development and disease 2012. PMID:


  147. Li Qian, Yu Huang, Amy Foley, Vasanth Vedantham, Ian Spencer, Simon J Conway, Jidong Fu, Deepak Srivastava. Abstract 10466: In Vivo Reprogramming of Murine Cardiac Fibroblasts into Induced Cardiomyocytes. Circulation 2011. PMID:


  148. Roach JC, Glusman G, Hubley R, Montsaroff SZ, Holloway AK, Mauldin DE, Srivastava D, Garg V, Pollard KS, Galas DJ, Hood L, Smit AF. Chromosomal haplotypes by genetic phasing of human families. American journal of human genetics 2011. PMID: 21855840


  149. Kwon C, Cheng P, King IN, Andersen P, Shenje L, Nigam V, Srivastava D. Notch post-translationally regulates ß-catenin protein in stem and progenitor cells. Nature cell biology 2011. PMID: 21841793


  150. AlRais F, Feldstein VA, Srivastava D, Gosnell K, Moon-Grady AJ. Monochorionic twins discordant for congenital heart disease: a referral center's experience and possible pathophysiologic mechanisms. Prenatal diagnosis 2011. PMID: 21744365


  151. Qian L, Wythe JD, Liu J, Cartry J, Vogler G, Mohapatra B, Otway RT, Huang Y, King IN, Maillet M, Zheng Y, Crawley T, Taghli-Lamallem O, Semsarian C, Dunwoodie S, Winlaw D, Harvey RP, Fatkin D, Towbin JA, Molkentin JD, Srivastava D, Ocorr K, Bruneau BG, Bodmer R. Tinman/Nkx2-5 acts via miR-1 and upstream of Cdc42 to regulate heart function across species. The Journal of cell biology 2011. PMID: 21690310


  152. Shieh JT, Huang Y, Gilmore J, Srivastava D. Elevated miR-499 levels blunt the cardiac stress response. PloS one 2011. PMID: 21573063


  153. King IN, Qian L, Liang J, Huang Y, Shieh JT, Kwon C, Srivastava D. A genome-wide screen reveals a role for microRNA-1 in modulating cardiac cell polarity. Developmental cell 2011. PMID: 21497762


  154. Fish JE, Wythe JD, Xiao T, Bruneau BG, Stainier DY, Srivastava D, Woo S. A Slit/miR-218/Robo regulatory loop is required during heart tube formation in zebrafish. Development (Cambridge, England) 2011. PMID: 21385766


  155. Qian L, Van Laake LW, Huang Y, Liu S, Wendland MF, Srivastava D. miR-24 inhibits apoptosis and represses Bim in mouse cardiomyocytes. The Journal of experimental medicine 2011. PMID: 21383058


  156. Li Q, Kannan A, DeMayo FJ, Lydon JP, Cooke PS, Yamagishi H, Srivastava D, Bagchi MK, Bagchi IC. The antiproliferative action of progesterone in uterine epithelium is mediated by Hand2. Science (New York, N.Y.) 2011. PMID: 21330545


  157. Yu S, Crawford D, Tsuchihashi T, Behrens TW, Srivastava D. The chemokine receptor CXCR7 functions to regulate cardiac valve remodeling. Developmental dynamics : an official publication of the American Association of Anatomists 2011. PMID: 21246655


  158. Srivastava D. <i>Rudplph's Pediatrics</i> (Rudolph C, Rudolph A, Lister G, First L, Gershon A, Eds) Control of embryologic cardiac development 2011. PMID:


  159. Tsuchihashi T, Maeda J, Shin CH, Ivey KN, Black BL, Olson EN, Yamagishi H, Srivastava D. Hand2 function in second heart field progenitors is essential for cardiogenesis. Developmental biology 2010. PMID: 21185281


  160. Sheehy NT, Cordes KR, White MP, Ivey KN, Srivastava D. The neural crest-enriched microRNA miR-452 regulates epithelial-mesenchymal signaling in the first pharyngeal arch. Development (Cambridge, England) 2010. PMID: 21098571


  161. Park CY, Pierce SA, von Drehle M, Ivey KN, Morgan JA, Blau HM, Srivastava D. skNAC, a Smyd1-interacting transcription factor, is involved in cardiac development and skeletal muscle growth and regeneration. Proceedings of the National Academy of Sciences of the United States of America 2010. PMID: 21071677


  162. Maitra M, Koenig SN, Srivastava D, Garg V. Identification of GATA6 sequence variants in patients with congenital heart defects. Pediatric research 2010. PMID: 20581743


  163. Ieda M, Fu JD, Delgado-Olguin P, Vedantham V, Hayashi Y, Bruneau BG, Srivastava D. Direct reprogramming of fibroblasts into functional cardiomyocytes by defined factors. Cell 2010. PMID: 20691899


  164. Stephanie Woo, Jason E. Fish, Joshua D. Wythe, Benoit B. Bruneau, Didier Y. Stainier, Deepak Srivastava. A novel Slit–Robo–miR-218 signaling axis regulates VEGF-mediated heart tube formation in zebrafish. Developmental biology 2010. PMID:


  165. Ivey KN, Srivastava D. MicroRNAs as regulators of differentiation and cell fate decisions. Cell stem cell 2010. PMID: 20621048


  166. Nigam V, Sievers HH, Jensen BC, Sier HA, Simpson PC, Srivastava D, Mohamed SA. Altered microRNAs in bicuspid aortic valve: a comparison between stenotic and insufficient valves. The Journal of heart valve disease 2010. PMID: 20845893


  167. van Laake LW, Qian L, Cheng P, Huang Y, Hsiao EC, Conklin BR, Srivastava D. Reporter-based isolation of induced pluripotent stem cell- and embryonic stem cell-derived cardiac progenitors reveals limited gene expression variance. Circulation research 2010. PMID: 20558827


  168. Jason E. Fish, Matthew S. Yan, Charles C. Matouk, Rosanne St. Bernard, J. J. David Ho, Anna Gavryushova, Deepak Srivastava, Philip A. Marsden. Hypoxic repression of endothelial nitric-oxide synthase transcription is coupled with eviction of promoter histones. Journal of Biological Chemistry 2010. PMID:


  169. Shrivastava S, Srivastava D, Olson EN, DiMaio JM, Bock-Marquette I. Thymosin beta4 and cardiac repair. Annals of the New York Academy of Sciences 2010. PMID: 20536454


  170. Qian L, Srivastava D. Monkeying around with cardiac progenitors: hope for the future. The Journal of clinical investigation 2010. PMID: 20335651


  171. Cordes KR, Srivastava D, Ivey KN. MicroRNAs in cardiac development. Pediatric cardiology 2010. PMID: 20140609


  172. SA Mohamed, V Nigam, B Jensen, H Sier, P Simpson, D Srivastava, HH Sievers. Micrornas in bicuspid aortic valve: a comparison between stenosis and insufficiency aortic valve. The Thoracic and cardiovascular surgeon 2010. PMID:


  173. Cordes KR, Srivastava D. <i>Heart Development and Regeneration</i> (Rosenthal N, Harvey R, Eds) MicroRNA regulation of cardiac development and disease 2010. PMID:


  174. Bruneau BG, Burn J, Srivastava D. <i>Paediatric Cardiology</i> (Anderson RH, Baker EJ, Penny D, Redington AN, Rigby ML, Wernovsky G, Eds) The Aetiology of Congenital Cardiac Disease 2010. PMID:


  175. Benoit G. Bruneau, John Burn, Deepak Srivastava. CHAPTER 9 Aetiology of Congenital Cardiac Disease. Paediatric Cardiology 2010. PMID:


  176. Kimberly R. Cordes, Deepak Srivastava. Chapter 10.3 MicroRNA Regulation of Cardiac Development and Disease. Heart Development and Regeneration 2010. PMID:


  177. Deepak Srivastava, Chulan Kwon. Chapter 309 Signaling Pathways Involved in Cardiogenesis. Handbook of Cell Signaling 2010. PMID:


  178. Fish JE, Yan MS, Matouk CC, St Bernard R, Ho JJ, Ho JJ, Gavryushova A, Srivastava D, Marsden PA. Hypoxic repression of endothelial nitric-oxide synthase transcription is coupled with eviction of promoter histones. The Journal of biological chemistry 2009. PMID: 19880524


  179. Nigam V, Srivastava D. Notch1 represses osteogenic pathways in aortic valve cells. Journal of molecular and cellular cardiology 2009. PMID: 19695258


  180. Kwon C, Qian L, Cheng P, Nigam V, Arnold J, Srivastava D. A regulatory pathway involving Notch1/beta-catenin/Isl1 determines cardiac progenitor cell fate. Nature cell biology 2009. PMID: 19620969


  181. Shieh JT, Srivastava D. Heart malformation: what are the chances it could happen again? Circulation 2009. PMID: 19597046


  182. Cordes KR, Sheehy NT, White MP, Berry EC, Morton SU, Muth AN, Lee TH, Miano JM, Ivey KN, Srivastava D. miR-145 and miR-143 regulate smooth muscle cell fate and plasticity. Nature 2009. PMID: 19578358


  183. Bock-Marquette I, Shrivastava S, Pipes GC, Thatcher JE, Blystone A, Shelton JM, Galindo CL, Melegh B, Srivastava D, Olson EN, DiMaio JM. Thymosin beta4 mediated PKC activation is essential to initiate the embryonic coronary developmental program and epicardial progenitor cell activation in adult mice in vivo. Journal of molecular and cellular cardiology 2009. PMID: 19358334


  184. Cordes KR, Srivastava D. MicroRNA regulation of cardiovascular development. Circulation research 2009. PMID: 19325160


  185. Tronson NC, Schrick C, Guzman YF, Huh KH, Srivastava DP, Penzes P, Guedea AL, Gao C, Radulovic J. Segregated populations of hippocampal principal CA1 neurons mediating conditioning and extinction of contextual fear. The Journal of neuroscience : the official journal of the Society for Neuroscience 2009. PMID: 19295145


  186. Ellis J, Bruneau BG, Keller G, Lemischka IR, Nagy A, Rossant J, Srivastava D, Zandstra PW, Stanford WL. Alternative induced pluripotent stem cell characterization criteria for in vitro applications. Cell stem cell 2009. PMID: 19265656


  187. Ieda M, Tsuchihashi T, Ivey KN, Ross RS, Hong TT, Shaw RM, Srivastava D. Cardiac fibroblasts regulate myocardial proliferation through beta1 integrin signaling. Developmental cell 2009. PMID: 19217425


  188. Fish JE, Srivastava D. MicroRNAs: opening a new vein in angiogenesis research. Science signaling 2009. PMID: 19126861


  189. Srivastava D, Kwon C. <i>Handbook of Cell Signaling</i> (Bradshaw RA, Dennis EA, Eds) Signaling pathways involved in cardiogenesis 2009. PMID:


  190. Kwon C, Cordes KR, Srivastava D. Wnt/beta-catenin signaling acts at multiple developmental stages to promote mammalian cardiogenesis. Cell cycle (Georgetown, Tex.) 2008. PMID: 19066459


  191. Maitra M, Schluterman MK, Nichols HA, Richardson JA, Lo CW, Srivastava D, Garg V. Interaction of Gata4 and Gata6 with Tbx5 is critical for normal cardiac development. Developmental biology 2008. PMID: 19084512


  192. Niu Z, Iyer D, Conway SJ, Martin JF, Ivey K, Srivastava D, Nordheim A, Schwartz RJ. Serum response factor orchestrates nascent sarcomerogenesis and silences the biomineralization gene program in the heart. Proceedings of the National Academy of Sciences of the United States of America 2008. PMID: 19004760


  193. Morton SU, Scherz PJ, Cordes KR, Ivey KN, Stainier DY, Srivastava D. microRNA-138 modulates cardiac patterning during embryonic development. Proceedings of the National Academy of Sciences of the United States of America 2008. PMID: 19004786


  194. Ransom JF, King IN, Garg V, Srivastava D. A rare human sequence variant reveals myocardin autoinhibition. The Journal of biological chemistry 2008. PMID: 18852265


  195. Fish JE, Santoro MM, Morton SU, Yu S, Yeh RF, Wythe JD, Ivey KN, Bruneau BG, Stainier DY, Srivastava D. miR-126 regulates angiogenic signaling and vascular integrity. Developmental cell 2008. PMID: 18694566


  196. Ivey KN, Sutcliffe D, Richardson J, Clyman RI, Garcia JA, Srivastava D. Transcriptional regulation during development of the ductus arteriosus. Circulation research 2008. PMID: 18635823


  197. Saxena A, Fish JE, White MD, Yu S, Smyth JW, Shaw RM, DiMaio JM, Srivastava D. Stromal cell-derived factor-1alpha is cardioprotective after myocardial infarction. Circulation 2008. PMID: 18427137


  198. Ivey KN, Muth A, Arnold J, King FW, Yeh RF, Fish JE, Hsiao EC, Schwartz RJ, Conklin BR, Bernstein HS, Srivastava D. MicroRNA regulation of cell lineages in mouse and human embryonic stem cells. Cell stem cell 2008. PMID: 18371447


  199. Nigam V, Srivastava D. <i>Inborn Errors of Development</i> (Epstein CJ, Ed) Molecular regulation of cardiogenesis 2008. PMID:


  200. Gong B, Sun J, Vargas G, Chang Q, Xu Y, Srivastava D, Boor PJ. Nonlinear imaging study of extracellular matrix in chemical-induced, developmental dissecting aortic aneurysm: evidence for defective collagen type III. Birth defects research. Part A, Clinical and molecular teratology 2008. PMID: 18044709


  201. Jia H, King IN, Chopra SS, Wan H, Ni TT, Jiang C, Guan X, Wells S, Srivastava D, Zhong TP. Vertebrate heart growth is regulated by functional antagonism between Gridlock and Gata5. Proceedings of the National Academy of Sciences of the United States of America 2007. PMID: 17715064


  202. Srivastava D, Saxena A, Michael Dimaio J, Bock-Marquette I. Thymosin beta4 is cardioprotective after myocardial infarction. Annals of the New York Academy of Sciences 2007. PMID: 17600280


  203. Rajagopal SK, Ma Q, Obler D, Shen J, Manichaikul A, Tomita-Mitchell A, Boardman K, Briggs C, Garg V, Srivastava D, Goldmuntz E, Broman KW, Benson DW, Smoot LB, Pu WT. Spectrum of heart disease associated with murine and human GATA4 mutation. Journal of molecular and cellular cardiology 2007. PMID: 17643447


  204. Kwon C, Arnold J, Hsiao EC, Taketo MM, Conklin BR, Srivastava D. Canonical Wnt signaling is a positive regulator of mammalian cardiac progenitors. Proceedings of the National Academy of Sciences of the United States of America 2007. PMID: 17576928


  205. Pierpont ME, Basson CT, Benson DW, Gelb BD, Giglia TM, Goldmuntz E, McGee G, Sable CA, Srivastava D, Webb CL, American Heart Association Congenital Cardiac Defects Committee, Council on Cardiovascular Disease i. Genetic basis for congenital heart defects: current knowledge: a scientific statement from the American Heart Association Congenital Cardiac Defects Committee, Council on Cardiovascular Disease in the Young: endorsed by the American Academy of Pediatrics. Circulation 2007. PMID: 17519398


  206. Xin M, Small EM, van Rooij E, Qi X, Richardson JA, Srivastava D, Nakagawa O, Olson EN. Essential roles of the bHLH transcription factor Hrt2 in repression of atrial gene expression and maintenance of postnatal cardiac function. Proceedings of the National Academy of Sciences of the United States of America 2007. PMID: 17468400


  207. Schluterman MK, Krysiak AE, Kathiriya IS, Abate N, Chandalia M, Srivastava D, Garg V. Screening and biochemical analysis of GATA4 sequence variations identified in patients with congenital heart disease. American journal of medical genetics. Part A 2007. PMID: 17352393


  208. Zhao Y, Ransom JF, Li A, Vedantham V, von Drehle M, Muth AN, Tsuchihashi T, McManus MT, Schwartz RJ, Srivastava D. Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2. Cell 2007. PMID: 17397913


  209. Zhao Y, Srivastava D. A developmental view of microRNA function. Trends in biochemical sciences 2007. PMID: 17350266


  210. Samal E, Srivastava D. <i>Advances in Developmental Biology</i> (Bodmer R, Ed) Role of microRNAs in Cardiovascular Biology 2007. PMID:


  211. Eva Samal, Deepak Srivastava. Role of microRNAs in Cardiovascular Biology. Cardiovascular Development 2007. PMID:


  212. Ransom J, Srivastava D. The genetics of cardiac birth defects. Seminars in cell & developmental biology 2006. PMID: 17240175


  213. Deepak Srivastava, Kathryn N. Ivey. Erratum: Potential of stem-cell-based therapies for heart disease. Nature 2006. PMID:


  214. Ivey KN, Srivastava D. The paradoxical patent ductus arteriosus. The Journal of clinical investigation 2006. PMID: 17080192


  215. Ramana KV, Willis MS, White MD, Horton JW, DiMaio JM, Srivastava D, Bhatnagar A, Srivastava SK. Endotoxin-induced cardiomyopathy and systemic inflammation in mice is prevented by aldose reductase inhibition. Circulation 2006. PMID: 17030682


  216. Srivastava D. Making or breaking the heart: from lineage determination to morphogenesis. Cell 2006. PMID: 16990131


  217. Srivastava D, Yu S. Stretching to meet needs: integrin-linked kinase and the cardiac pump. Genes & development 2006. PMID: 16951248


  218. Srivastava D, Ivey KN. Potential of stem-cell-based therapies for heart disease. Nature 2006. PMID: 16810246


  219. Capellini TD, Di Giacomo G, Salsi V, Brendolan A, Ferretti E, Srivastava D, Zappavigna V, Selleri L. Pbx1/Pbx2 requirement for distal limb patterning is mediated by the hierarchical control of Hox gene spatial distribution and Shh expression. Development (Cambridge, England) 2006. PMID: 16672333


  220. King IN, Kathiriya IS, Murakami M, Nakagawa M, Gardner KA, Srivastava D, Nakagawa O. Hrt and Hes negatively regulate Notch signaling through interactions with RBP-Jkappa. Biochemical and biophysical research communications 2006. PMID: 16682003


  221. Yamagishi C, Yamagishi H, Maeda J, Tsuchihashi T, Ivey K, Hu T, Srivastava D. Sonic hedgehog is essential for first pharyngeal arch development. Pediatric research 2006. PMID: 16492970


  222. Maeda J, Yamagishi H, McAnally J, Yamagishi C, Srivastava D. Tbx1 is regulated by forkhead proteins in the secondary heart field. Developmental dynamics : an official publication of the American Association of Anatomists 2006. PMID: 16444712


  223. Gong B, Trent MB, Srivastava D, Boor PJ. Chemical-induced, nonlethal, developmental model of dissecting aortic aneurysm. Birth defects research. Part A, Clinical and molecular teratology 2006. PMID: 16397885


  224. Srivastava D. Genetic regulation of cardiogenesis and congenital heart disease. Annual review of pathology 2006. PMID: 18039113


  225. Koshiba-Takeuchi K, Takeuchi JK, Arruda EP, Kathiriya IS, Mo R, Hui CC, Srivastava D, Bruneau BG. Cooperative and antagonistic interactions between Sall4 and Tbx5 pattern the mouse limb and heart. Nature genetics 2005. PMID: 16380715


  226. Kwon C, Han Z, Olson EN, Srivastava D. MicroRNA1 influences cardiac differentiation in Drosophila and regulates Notch signaling. Proceedings of the National Academy of Sciences of the United States of America 2005. PMID: 16357195


  227. Costantini DL, Arruda EP, Agarwal P, Kim KH, Zhu Y, Zhu W, Lebel M, Cheng CW, Park CY, Pierce SA, Guerchicoff A, Pollevick GD, Chan TY, Kabir MG, Cheng SH, Husain M, Antzelevitch C, Srivastava D, Gross GJ, Hui CC, Backx PH, Bruneau BG. The homeodomain transcription factor Irx5 establishes the mouse cardiac ventricular repolarization gradient. Cell 2005. PMID: 16239150


  228. Garg V, Muth AN, Ransom JF, Schluterman MK, Barnes R, King IN, Grossfeld PD, Srivastava D. Mutations in NOTCH1 cause aortic valve disease. Nature 2005. PMID: 16025100


  229. Zhao Y, Samal E, Srivastava D. Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis. Nature 2005. PMID: 15951802


  230. Aiyer AR, Honarpour N, Herz J, Srivastava D. Loss of Apaf-1 leads to partial rescue of the HAND2-null phenotype. Developmental biology 2005. PMID: 15649468


  231. Garg V, Srivastava D. <i>Principles of Molecular Cardiology</i> (Runge MS, Patterson C, Eds) Genetic underpinnings of cardiogenesis and congenital heart disease 2005. PMID:


  232. Vidu Garg, Deepak Srivastava. Genetic Underpinnings of Cardiogenesis and Congenital Heart Disease. Principles of Molecular Cardiology 2005. PMID:


  233. McFadden DG, Barbosa AC, Richardson JA, Schneider MD, Srivastava D, Olson EN. The Hand1 and Hand2 transcription factors regulate expansion of the embryonic cardiac ventricles in a gene dosage-dependent manner. Development (Cambridge, England) 2004. PMID: 15576406


  234. Bock-Marquette I, Saxena A, White MD, Dimaio JM, Srivastava D. Thymosin beta4 activates integrin-linked kinase and promotes cardiac cell migration, survival and cardiac repair. Nature 2004. PMID: 15565145


  235. Kathiriya IS, King IN, Murakami M, Nakagawa M, Astle JM, Gardner KA, Gerard RD, Olson EN, Srivastava D, Nakagawa O. Hairy-related transcription factors inhibit GATA-dependent cardiac gene expression through a signal-responsive mechanism. The Journal of biological chemistry 2004. PMID: 15485867


  236. Hu T, Yamagishi H, Maeda J, McAnally J, Yamagishi C, Srivastava D. Tbx1 regulates fibroblast growth factors in the anterior heart field through a reinforcing autoregulatory loop involving forkhead transcription factors. Development (Cambridge, England) 2004. PMID: 15469978


  237. Cowan CA, Yokoyama N, Saxena A, Chumley MJ, Silvany RE, Baker LA, Srivastava D, Henkemeyer M. Ephrin-B2 reverse signaling is required for axon pathfinding and cardiac valve formation but not early vascular development. Developmental biology 2004. PMID: 15223333


  238. Srivastava D. Heart disease: an ongoing genetic battle? Nature 2004. PMID: 15215849


  239. Srivastava D, Olson EN. <i>Molecular Basis of Cardiovascular Disease: A Companion to Braunwald's Heart Disease</i> (Chien KR, Ed) Cardiac Development and Congenital Heart Disease 2004. PMID:


  240. Yamagishi H, Srivastava D. Unraveling the genetic and developmental mysteries of 22q11 deletion syndrome. Trends in molecular medicine 2003. PMID: 13129704


  241. Garg V, Kathiriya IS, Barnes R, Schluterman MK, King IN, Butler CA, Rothrock CR, Eapen RS, Hirayama-Yamada K, Joo K, Matsuoka R, Cohen JC, Srivastava D. GATA4 mutations cause human congenital heart defects and reveal an interaction with TBX5. Nature 2003. PMID: 12845333


  242. Ivey K, Tyson B, Ukidwe P, McFadden DG, Levi G, Olson EN, Srivastava D, Wilkie TM. Galphaq and Galpha11 proteins mediate endothelin-1 signaling in neural crest-derived pharyngeal arch mesenchyme. Developmental biology 2003. PMID: 12648486


  243. Yamagishi C, Hierck BP, Gittenberger-De Groot AC, Yamagishi H, Srivastava D. Functional attenuation of UFD1l, a 22q11.2 deletion syndrome candidate gene, leads to cardiac outflow septation defects in chicken embryos. Pediatric research 2003. PMID: 12612215


  244. Yamagishi H, Maeda J, Hu T, McAnally J, Conway SJ, Kume T, Meyers EN, Yamagishi C, Srivastava D. Tbx1 is regulated by tissue-specific forkhead proteins through a common Sonic hedgehog-responsive enhancer. Genes & development 2003. PMID: 12533514


  245. Srivastava D. <i>Handbook of Cell Signaling</i> (Bradshaw RA, Dennis EA, Eds) Signaling pathways involved in cardiogenesis 2003. PMID:


  246. Srivastava D. Building a heart: implications for congenital heart disease. Journal of nuclear cardiology : official publication of the American Society of Nuclear Cardiology 2003. PMID: 12569333


  247. Deepak Srivastava. Chapter 335 Signaling Pathways Involved in Cardiogenesis. Handbook of Cell Signaling 2003. PMID:


  248. Villanueva MP, Aiyer AR, Muller S, Pletcher MT, Liu X, Emanuel B, Srivastava D, Reeves RH. Genetic and comparative mapping of genes dysregulated in mouse hearts lacking the Hand2 transcription factor gene. Genomics 2002. PMID: 12504851


  249. Abe M, Tamamura Y, Yamagishi H, Maeda T, Kato J, Tabata MJ, Srivastava D, Wakisaka S, Kurisu K. Tooth-type specific expression of dHAND/Hand2: possible involvement in murine lower incisor morphogenesis. Cell and tissue research 2002. PMID: 12397375


  250. Gottlieb PD, Pierce SA, Sims RJ, Yamagishi H, Weihe EK, Harriss JV, Maika SD, Kuziel WA, King HL, Olson EN, Nakagawa O, Srivastava D. Bop encodes a muscle-restricted protein containing MYND and SET domains and is essential for cardiac differentiation and morphogenesis. Nature genetics 2002. PMID: 11923873


  251. Srivastava D. <i>Neonatal Cardiology</i> (Artman M, Mahony L, Teitel DF, Eds) Molecular and morphogenetic cardiac embryology: Implications for congenital heart disease 2002. PMID:


  252. Srivastava D, Gottlieb PD, Olson EN. Molecular mechanisms of ventricular hypoplasia. Cold Spring Harbor symposia on quantitative biology 2002. PMID: 12858532


  253. Yamagishi H, Yamagishi C, Nakagawa O, Harvey RP, Olson EN, Srivastava D. The combinatorial activities of Nkx2.5 and dHAND are essential for cardiac ventricle formation. Developmental biology 2001. PMID: 11784028


  254. Kunte A, Ivey K, Yamagishi C, Garg V, Yamagishi H, Srivastava D. A common cis-acting sequence in the DiGeorge critical region regulates bi-directional transcription of UFD1L and CDC45L. Mechanisms of development 2001. PMID: 11578863


  255. Natarajan A, Yamagishi H, Ahmad F, Li D, Roberts R, Matsuoka R, Hill S, Srivastava D. Human eHAND, but not dHAND, is down-regulated in cardiomyopathies. Journal of molecular and cellular cardiology 2001. PMID: 11549340


  256. Garg V, Yamagishi C, Hu T, Kathiriya IS, Yamagishi H, Srivastava D. Tbx1, a DiGeorge syndrome candidate gene, is regulated by sonic hedgehog during pharyngeal arch development. Developmental biology 2001. PMID: 11412027


  257. Liu ZP, Nakagawa O, Nakagawa M, Yanagisawa H, Passier R, Richardson JA, Srivastava D, Olson EN. CHAMP, a novel cardiac-specific helicase regulated by MEF2C. Developmental biology 2001. PMID: 11397016


  258. Olson EN, Srivastava D. <i>Encyclopedia of Molecular Medicine</i> (Creighton TE and Kazazian HH, Eds) HAND transcription factors 2001. PMID:


  259. Srivastava D, Baldwin HS. <i>Moss and Adams' Heart Disease in Infants, Children, and Adolescents</i> (Allen HD, Gutsgell HP, Clark EB, Driscoll DJ, Eds) Molecular determinants of cardiac development 2001. PMID:


  260. Srivastava D. Genetic assembly of the heart: implications for congenital heart disease. Annual review of physiology 2001. PMID: 11181963


  261. Nakagawa O, McFadden DG, Nakagawa M, Yanagisawa H, Hu T, Srivastava D, Olson EN. Members of the HRT family of basic helix-loop-helix proteins act as transcriptional repressors downstream of Notch signaling. Proceedings of the National Academy of Sciences of the United States of America 2000. PMID: 11095750


  262. McFadden DG, Charité J, Richardson JA, Srivastava D, Firulli AB, Olson EN. A GATA-dependent right ventricular enhancer controls dHAND transcription in the developing heart. Development (Cambridge, England) 2000. PMID: 11076755


  263. Fisher SA, Langille BL, Srivastava D. Apoptosis during cardiovascular development. Circulation research 2000. PMID: 11073880


  264. Srivastava D, Olson EN. A genetic blueprint for cardiac development. Nature 2000. PMID: 11001064


  265. Angelo S, Lohr J, Lee KH, Ticho BS, Breitbart RE, Hill S, Yost HJ, Srivastava D. Conservation of sequence and expression of Xenopus and zebrafish dHAND during cardiac, branchial arch and lateral mesoderm development. Mechanisms of development 2000. PMID: 10906469


  266. Srivastava D. Congenital heart defects: trapping the genetic culprits. Circulation research 2000. PMID: 10807859


  267. Fernandez-Teran M, Piedra ME, Kathiriya IS, Srivastava D, Rodriguez-Rey JC, Ros MA. Role of dHAND in the anterior-posterior polarization of the limb bud: implications for the Sonic hedgehog pathway. Development (Cambridge, England) 2000. PMID: 10769237


  268. Yamagishi H, Olson EN, Srivastava D. The basic helix-loop-helix transcription factor, dHAND, is required for vascular development. The Journal of clinical investigation 2000. PMID: 10675351


  269. Yamagishi H, Srivastava D. <i>Etiology and Morphogenesis of Congenital Heart Disease</i> (Clark EB, Nakazawa M, Takao A, Eds) Role of the bHLH transcription factor, dHAND, in cranial/cardiac neural crest development 2000. PMID:


  270. Srivastava D. <i>Etiology and Morphogenesis of Congenital Heart Disease</i> (Takao A, Nakazawa M, Clark EB, Eds) Understanding CHD through dissection of segmental cardiac molecular pathways 2000. PMID:


  271. Srivastava D. DiGeorge syndrome: an enigma in mice and men. Molecular medicine today 2000. PMID: 10637569


  272. Kathiriya IS, Srivastava D. Left-right asymmetry and cardiac looping: implications for cardiac development and congenital heart disease. American journal of medical genetics 2000. PMID: 11376438


  273. Nakagawa O, Nakagawa M, Richardson JA, Olson EN, Srivastava D. HRT1, HRT2, and HRT3: a new subclass of bHLH transcription factors marking specific cardiac, somitic, and pharyngeal arch segments. Developmental biology 1999. PMID: 10588864


  274. Srivastava D. Developmental and genetic aspects of congenital heart disease. Current opinion in cardiology 1999. PMID: 10358798


  275. Yamagishi H, Garg V, Matsuoka R, Thomas T, Srivastava D. A molecular pathway revealing a genetic basis for human cardiac and craniofacial defects. Science (New York, N.Y.) 1999. PMID: 10024240


  276. Deepak Srivastava. 9 Segmental Regulation of Cardiac Development by the Basic Helix-Loop-Helix Transcription Factors dHAND and eHAND. Heart Development 1999. PMID:


  277. Srivastava D. <i>Heart Development</i> (Rosenthal N and Harvey R, Eds) Segmental regulation of cardiac development by the basic helix-loop-helix transcription factors dHAND and eHAND 1999. PMID:


  278. Srivastava D. HAND proteins: molecular mediators of cardiac development and congenital heart disease. Trends in cardiovascular medicine 1999. PMID: 10189962


  279. Thomas T, Kurihara H, Yamagishi H, Kurihara Y, Yazaki Y, Olson EN, Srivastava D. A signaling cascade involving endothelin-1, dHAND and msx1 regulates development of neural-crest-derived branchial arch mesenchyme. Development (Cambridge, England) 1998. PMID: 9671575


  280. Thomas T, Yamagishi H, Overbeek PA, Olson EN, Srivastava D. The bHLH factors, dHAND and eHAND, specify pulmonary and systemic cardiac ventricles independent of left-right sidedness. Developmental biology 1998. PMID: 9576835


  281. Firulli AB, McFadden DG, Lin Q, Srivastava D, Olson EN. Heart and extra-embryonic mesodermal defects in mouse embryos lacking the bHLH transcription factor Hand1. Nature genetics 1998. PMID: 9500550


  282. Deepak Srivastava. Role of the Transcription Factors dHAND and eHAND in Cardiac Morphogenesis. Pediatric cardiology 1998. PMID:


  283. Srivastava D, Olson EN. Knowing in your heart what's right. Trends in cell biology 1997. PMID: 17709004


  284. Srivastava D. Left, right ... which way to turn? Nature genetics 1997. PMID: 9354777


  285. Srivastava D, Thomas T, Lin Q, Kirby ML, Brown D, Olson EN. Regulation of cardiac mesodermal and neural crest development by the bHLH transcription factor, dHAND. Nature genetics 1997. PMID: 9171826


  286. Srivastava D. <i>Genetic Control of Heart Development</i> (Harvey RP, Olson EN, Schulz RA, Altman JS, Eds) The bHLH proteins, dHAND and eHAND in cardiac development 1997. PMID:


  287. Lin Q, Srivastava D, Olson EN. A transcriptional pathway for cardiac development. Cold Spring Harbor symposia on quantitative biology 1997. PMID: 9598375


  288. Srivastava D, Olson EN. Neurotrophin-3 knocks heart off Trk. Nature medicine 1996. PMID: 8837596


  289. Olson EN, Srivastava D. Molecular pathways controlling heart development. Science (New York, N.Y.) 1996. PMID: 8614825


  290. Srivastava D, Cserjesi P, Olson EN. A subclass of bHLH proteins required for cardiac morphogenesis. Science (New York, N.Y.) 1995. PMID: 8533092


  291. Srivastava D, Preminger T, Lock JE, Mandell V, Keane JF, Mayer JE, Kozakewich H, Spevak PJ. Hepatic venous blood and the development of pulmonary arteriovenous malformations in congenital heart disease. Circulation 1995. PMID: 7648668


  292. Srivastava D, Thompson EB. Two glucocorticoid binding sites on the human glucocorticoid receptor. Endocrinology 1990. PMID: 2205477


  293. Thompson EB, Srivastava D, Johnson BH. Interactions of the phenylpyrazolo steroid cortivazol with glucocorticoid receptors in steroid-sensitive and -resistant human leukemic cells. Cancer research 1989. PMID: 2702665